J3_6VZ7_034

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VZ7|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ7_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.046

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VZ7|1|a|G|297
6VZ7|1|a|G|298
6VZ7|1|a|A|299
6VZ7|1|a|A|300
6VZ7|1|a|G|301
*
6VZ7|1|a|C|316
6VZ7|1|a|G|317
6VZ7|1|a|C|318
6VZ7|1|a|G|319
6VZ7|1|a|A|320
6VZ7|1|a|U|321
6VZ7|1|a|A|322
6VZ7|1|a|C|323
6VZ7|1|a|A|324
6VZ7|1|a|G|325
*
6VZ7|1|a|C|337
6VZ7|1|a|G|338
6VZ7|1|a|U|339
6VZ7|1|a|A|340
6VZ7|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4