3D structure

PDB id
6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VZJ_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0664
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6VZJ|1|D|C|936
6VZJ|1|D|A|937
6VZJ|1|D|A|938
6VZJ|1|D|G|939
*
6VZJ|1|D|C|1344
6VZJ|1|D|U|1345
6VZJ|1|D|A|1346
6VZJ|1|D|G|1347
6VZJ|1|D|U|1348
6VZJ|1|D|A|1349
6VZJ|1|D|A|1350
*
6VZJ|1|D|U|1372
6VZJ|1|D|G|1373
6VZJ|1|D|A|1374
6VZJ|1|D|A|1375
6VZJ|1|D|U|1376
6VZJ|1|D|A|1377
6VZJ|1|D|C|1378
6VZJ|1|D|G|1379

Current chains

Chain D
16S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA
Chain M
30S ribosomal protein S7
Chain O
30S ribosomal protein S9

Coloring options:


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