J3_6W2S_013
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2S_013 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.4414
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6W2S|1|A|U|1340
6W2S|1|A|C|1341
6W2S|1|A|U|1342
6W2S|1|A|U|1343
6W2S|1|A|A|1344
6W2S|1|A|G|1345
*
6W2S|1|A|C|1384
6W2S|1|A|G|1385
6W2S|1|A|A|1386
6W2S|1|A|G|1387
6W2S|1|A|A|1388
6W2S|1|A|C|1389
*
6W2S|1|A|G|1481
6W2S|1|A|C|1482
6W2S|1|A|A|1483
6W2S|1|A|A|1484
6W2S|1|A|U|1485
6W2S|1|A|A|1486
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- uS5
- Chain E
- uS3
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain e
- eS29
Coloring options: