J3_6W2T_001

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GAUUACG*UCGGACAG*UUC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|A|G|384
6W2T|1|A|A|385
6W2T|1|A|U|386
6W2T|1|A|U|387
6W2T|1|A|A|388
6W2T|1|A|C|389
6W2T|1|A|G|390
*
6W2T|1|A|U|401
6W2T|1|A|C|402
6W2T|1|A|G|403
6W2T|1|A|G|404
6W2T|1|A|A|405
6W2T|1|A|C|406
6W2T|1|A|A|407
6W2T|1|A|G|408
*
6W2T|1|A|U|435
6W2T|1|A|U|436
6W2T|1|A|C|437

Current chains

Chain A

CrPV 5'-UTR IRES

Nearby chains

Chain E

uS3

Chain V

uS10