J3_6W2T_002
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- ACGCCACUGC*GACAUACC*GUUUUUU
- Length
- 25 nucleotides
- Bulged bases
- 6W2T|1|A|U|551, 6W2T|1|A|C|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W2T|1|A|A|521
6W2T|1|A|C|522
6W2T|1|A|G|523
6W2T|1|A|C|524
6W2T|1|A|C|525
6W2T|1|A|A|526
6W2T|1|A|C|527
6W2T|1|A|U|528
6W2T|1|A|G|529
6W2T|1|A|C|530
*
6W2T|1|A|G|547
6W2T|1|A|A|548
6W2T|1|A|C|549
6W2T|1|A|A|550
6W2T|1|A|U|551
6W2T|1|A|A|552
6W2T|1|A|C|553
6W2T|1|A|C|554
*
6W2T|1|A|G|566
6W2T|1|A|U|567
6W2T|1|A|U|568
6W2T|1|A|U|569
6W2T|1|A|U|570
6W2T|1|A|U|571
6W2T|1|A|U|572
Current chains
- Chain A
- CrPV 5'-UTR IRES
Nearby chains
- Chain 1
- Eukaryotic translation initiation factor 3 subunit A
- Chain 2
- Eukaryotic translation initiation factor 3 subunit C
- Chain S
- eS17
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