J3_6W6K_016

3D structure

PDB id

6W6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Activated-high-Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

6W6K|1|A|A|1377, 6W6K|1|A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6K_016 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2819

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6W6K|1|A|C|936
6W6K|1|A|A|937
6W6K|1|A|A|938
6W6K|1|A|G|939
*
6W6K|1|A|C|1344
6W6K|1|A|U|1345
6W6K|1|A|A|1346
6W6K|1|A|G|1347
6W6K|1|A|U|1348
6W6K|1|A|A|1349
6W6K|1|A|A|1350
*
6W6K|1|A|U|1372
6W6K|1|A|G|1373
6W6K|1|A|A|1374
6W6K|1|A|A|1375
6W6K|1|A|U|1376
6W6K|1|A|A|1377
6W6K|1|A|C|1378
6W6K|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9