J3_6W6L_015
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6W6L|1|t|C|4085, 6W6L|1|t|U|4086, 6W6L|1|t|U|4087, 6W6L|1|t|C|4088, 6W6L|1|t|U|4089, 6W6L|1|t|G|4090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W6L_015 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.4928
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6W6L|1|t|G|4061
6W6L|1|t|G|4062
6W6L|1|t|G|4063
6W6L|1|t|G|4064
*
6W6L|1|t|C|4083
6W6L|1|t|G|4084
6W6L|1|t|C|4085
6W6L|1|t|U|4086
6W6L|1|t|U|4087
6W6L|1|t|C|4088
6W6L|1|t|U|4089
6W6L|1|t|G|4090
6W6L|1|t|G|4091
6W6L|1|t|C|4092
6W6L|1|t|G|4093
6W6L|1|t|C|4094
6W6L|1|t|C|4095
6W6L|1|t|A|4096
6W6L|1|t|A|4097
6W6L|1|t|G|4098
*
6W6L|1|t|C|4117
6W6L|1|t|G|4118
6W6L|1|t|A|4119
6W6L|1|t|C|4120
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain I
- 60S ribosomal protein L7a
- Chain a
- 60S ribosomal protein L27
- Chain d
- 60S ribosomal protein L30
- Chain h
- 60S ribosomal protein L34
- Chain q
- 60S ribosomal protein L37a
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