J3_6W6L_018

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CAU*GCUUCUG*CAAGG

Length

15 nucleotides

Bulged bases

6W6L|1|t|U|4946, 6W6L|1|t|U|4949, 6W6L|1|t|A|5019

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W6L|1|t|C|4928
6W6L|1|t|A|4929
6W6L|1|t|U|4930
*
6W6L|1|t|G|4944
6W6L|1|t|C|4945
6W6L|1|t|U|4946
6W6L|1|t|U|4947
6W6L|1|t|C|4948
6W6L|1|t|U|4949
6W6L|1|t|G|4950
*
6W6L|1|t|C|5017
6W6L|1|t|A|5018
6W6L|1|t|A|5019
6W6L|1|t|G|5020
6W6L|1|t|G|5021

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain e

60S ribosomal protein L31