J3_6W6P_003

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6W6P|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6P_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1513

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6W6P|1|A|C|272
6W6P|1|A|A|273
6W6P|1|A|A|274
6W6P|1|A|A|275
6W6P|1|A|C|276
*
6W6P|1|A|G|295
6W6P|1|A|G|296
6W6P|1|A|G|297
6W6P|1|A|U|298
6W6P|1|A|U|299
6W6P|1|A|G|300
6W6P|1|A|U|301
6W6P|1|A|A|302
*
6W6P|1|A|U|409
6W6P|1|A|G|410

Current chains

Chain A

23S rRNA

Nearby chains