J3_6W6P_004

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6W6P|1|A|U|726, 6W6P|1|A|G|832, 6W6P|1|A|A|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6P_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0932

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6W6P|1|A|U|723
6W6P|1|A|G|724
6W6P|1|A|A|725
6W6P|1|A|U|726
6W6P|1|A|C|727
6W6P|1|A|U|728
6W6P|1|A|A|729
*
6W6P|1|A|U|813
6W6P|1|A|A|814
6W6P|1|A|G|815
*
6W6P|1|A|C|831
6W6P|1|A|G|832
6W6P|1|A|A|833
6W6P|1|A|A|834

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2