J3_6W6P_005

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6P_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0795

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6W6P|1|A|C|738
6W6P|1|A|A|739
6W6P|1|A|G|740
*
6W6P|1|A|C|772
6W6P|1|A|G|773
6W6P|1|A|A|774
6W6P|1|A|A|775
6W6P|1|A|C|776
*
6W6P|1|A|G|800
6W6P|1|A|A|801
6W6P|1|A|U|802
6W6P|1|A|G|803

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2