J3_6W6P_006

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

6W6P|1|A|U|1338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6P_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1446

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6W6P|1|A|C|1334
6W6P|1|A|G|1335
6W6P|1|A|U|1336
6W6P|1|A|A|1337
6W6P|1|A|U|1338
6W6P|1|A|G|1339
*
6W6P|1|A|C|1668
6W6P|1|A|G|1669
6W6P|1|A|A|1670
*
6W6P|1|A|U|1682
6W6P|1|A|A|1683
6W6P|1|A|A|1684
6W6P|1|A|G|1685

Current chains

Chain A

23S rRNA

Nearby chains