J3_6W7N_016

3D structure

PDB id

6W7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUA*UACCGGUGG*CGGCC

Length

18 nucleotides

Bulged bases

6W7N|1|A|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W7N_016 not in the Motif Atlas

Geometric match to J3_4V88_033

Geometric discrepancy: 0.2523

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6W7N|1|A|G|670
6W7N|1|A|G|671
6W7N|1|A|U|672
6W7N|1|A|A|673
*
6W7N|1|A|U|717
6W7N|1|A|A|718
6W7N|1|A|C|719
6W7N|1|A|C|720
6W7N|1|A|G|721
6W7N|1|A|G|722
6W7N|1|A|U|723
6W7N|1|A|G|724
6W7N|1|A|G|725
*
6W7N|1|A|C|732
6W7N|1|A|G|733
6W7N|1|A|G|734
6W7N|1|A|C|735
6W7N|1|A|C|736

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S15