J3_6WD7_005

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD7_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1827

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6WD7|1|1|G|1055
6WD7|1|1|G|1056
6WD7|1|1|A|1057
*
6WD7|1|1|U|1081
6WD7|1|1|U|1082
6WD7|1|1|U|1083
6WD7|1|1|A|1084
6WD7|1|1|A|1085
6WD7|1|1|A|1086
6WD7|1|1|G|1087
*
6WD7|1|1|C|1102
6WD7|1|1|A|1103
6WD7|1|1|C|1104

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain h

50S ribosomal protein L10

Chain i

50S ribosomal protein L11