J3_6WD7_013

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

6WD7|1|1|U|2833, 6WD7|1|1|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD7_013 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.2058

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6WD7|1|1|G|2812
6WD7|1|1|A|2813
6WD7|1|1|A|2814
6WD7|1|1|C|2815
*
6WD7|1|1|G|2831
6WD7|1|1|U|2832
6WD7|1|1|U|2833
6WD7|1|1|G|2834
6WD7|1|1|A|2835
6WD7|1|1|U|2836
*
6WD7|1|1|A|2882
6WD7|1|1|A|2883
6WD7|1|1|U|2884
6WD7|1|1|G|2885
6WD7|1|1|A|2886
6WD7|1|1|A|2887
6WD7|1|1|C|2888

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22