J3_6WD8_017
3D structure
- PDB id
- 6WD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 6WD8|1|3|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WD8_017 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.129
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6WD8|1|3|U|672
6WD8|1|3|A|673
*
6WD8|1|3|U|717
6WD8|1|3|A|718
6WD8|1|3|C|719
6WD8|1|3|C|720
6WD8|1|3|G|721
6WD8|1|3|G|722
6WD8|1|3|U|723
6WD8|1|3|G|724
6WD8|1|3|G|725
*
6WD8|1|3|C|732
6WD8|1|3|G|733
6WD8|1|3|G|734
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain K
- 30S ribosomal protein S6
- Chain P
- 30S ribosomal protein S11
- Chain T
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S18
- Chain Z
- 30S ribosomal protein S21
- Chain b
- 50S ribosomal protein L2
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