J3_6WDA_021

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

6WDA|1|3|A|958, 6WDA|1|3|A|975, 6WDA|1|3|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDA_021 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.1043

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6WDA|1|3|U|955
6WDA|1|3|U|956
6WDA|1|3|U|957
6WDA|1|3|A|958
6WDA|1|3|A|959
6WDA|1|3|U|960
6WDA|1|3|U|961
6WDA|1|3|C|962
*
6WDA|1|3|G|973
6WDA|1|3|A|974
6WDA|1|3|A|975
6WDA|1|3|G|976
6WDA|1|3|A|977
6WDA|1|3|A|978
6WDA|1|3|C|979
6WDA|1|3|C|980
6WDA|1|3|U|981
6WDA|1|3|U|982
6WDA|1|3|A|983
6WDA|1|3|C|984
*
6WDA|1|3|G|1221
6WDA|1|3|G|1222
6WDA|1|3|C|1223
6WDA|1|3|U|1224
6WDA|1|3|A|1225

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S10

Chain R

30S ribosomal protein S13

Chain S

30S ribosomal protein S14

Chain X

30S ribosomal protein S19