3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6WDA|1|1|A|504, 6WDA|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDA_028 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1129
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6WDA|1|1|G|30
6WDA|1|1|C|31
*
6WDA|1|1|G|474
6WDA|1|1|C|475
6WDA|1|1|G|476
6WDA|1|1|A|477
6WDA|1|1|A|478
6WDA|1|1|A|479
6WDA|1|1|A|480
6WDA|1|1|G|481
6WDA|1|1|A|482
6WDA|1|1|A|483
6WDA|1|1|C|484
*
6WDA|1|1|G|496
6WDA|1|1|A|497
6WDA|1|1|G|498
6WDA|1|1|U|499
6WDA|1|1|G|500
6WDA|1|1|A|501
6WDA|1|1|A|502
6WDA|1|1|A|503
6WDA|1|1|A|504
6WDA|1|1|A|505
6WDA|1|1|G|506
6WDA|1|1|A|507
6WDA|1|1|A|508
6WDA|1|1|C|509
6WDA|1|1|C|510

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22
Chain u
50S ribosomal protein L24

Coloring options:


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