J3_6WDB_003

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6WDB|1|1|U|686, 6WDB|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDB_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1375

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDB|1|1|U|683
6WDB|1|1|G|684
6WDB|1|1|A|685
6WDB|1|1|U|686
6WDB|1|1|C|687
6WDB|1|1|U|688
6WDB|1|1|A|689
*
6WDB|1|1|U|773
6WDB|1|1|G|774
6WDB|1|1|G|775
*
6WDB|1|1|C|791
6WDB|1|1|A|792
6WDB|1|1|A|793
6WDB|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2