3D structure

PDB id
6WDB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDB_004 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0922
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

6WDB|1|1|C|698
6WDB|1|1|A|699
6WDB|1|1|G|700
*
6WDB|1|1|C|732
6WDB|1|1|G|733
6WDB|1|1|A|734
6WDB|1|1|A|735
6WDB|1|1|C|736
*
6WDB|1|1|G|760
6WDB|1|1|A|761
6WDB|1|1|U|762
6WDB|1|1|G|763

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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