3D structure

PDB id
6WDB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UAU*AGAC*GGUG
Length
11 nucleotides
Bulged bases
6WDB|1|3|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDB_025 not in the Motif Atlas
Homologous match to J3_5J7L_010
Geometric discrepancy: 0.1237
The information below is about J3_5J7L_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6WDB|1|3|U|1116
6WDB|1|3|A|1117
6WDB|1|3|U|1118
*
6WDB|1|3|A|1155
6WDB|1|3|G|1156
6WDB|1|3|A|1157
6WDB|1|3|C|1158
*
6WDB|1|3|G|1181
6WDB|1|3|G|1182
6WDB|1|3|U|1183
6WDB|1|3|G|1184

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.146 s