3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
6WDC|1|1|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDC_037 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.1766
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6WDC|1|1|G|297
6WDC|1|1|G|298
6WDC|1|1|A|299
6WDC|1|1|A|300
6WDC|1|1|G|301
*
6WDC|1|1|C|316
6WDC|1|1|G|317
6WDC|1|1|C|318
6WDC|1|1|G|319
6WDC|1|1|A|320
6WDC|1|1|U|321
6WDC|1|1|A|322
6WDC|1|1|C|323
6WDC|1|1|A|324
6WDC|1|1|G|325
*
6WDC|1|1|C|337
6WDC|1|1|G|338
6WDC|1|1|U|339
6WDC|1|1|A|340
6WDC|1|1|C|341

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain d
50S ribosomal protein L4
Chain u
50S ribosomal protein L24

Coloring options:


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