3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6WDF|1|1|A|504, 6WDF|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDF_027 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1069
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6WDF|1|1|G|30
6WDF|1|1|C|31
*
6WDF|1|1|G|474
6WDF|1|1|C|475
6WDF|1|1|G|476
6WDF|1|1|A|477
6WDF|1|1|A|478
6WDF|1|1|A|479
6WDF|1|1|A|480
6WDF|1|1|G|481
6WDF|1|1|A|482
6WDF|1|1|A|483
6WDF|1|1|C|484
*
6WDF|1|1|G|496
6WDF|1|1|A|497
6WDF|1|1|G|498
6WDF|1|1|U|499
6WDF|1|1|G|500
6WDF|1|1|A|501
6WDF|1|1|A|502
6WDF|1|1|A|503
6WDF|1|1|A|504
6WDF|1|1|A|505
6WDF|1|1|G|506
6WDF|1|1|A|507
6WDF|1|1|A|508
6WDF|1|1|C|509
6WDF|1|1|C|510

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22
Chain u
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2463 s