3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDF_035 not in the Motif Atlas
Homologous match to J3_5J7L_052
Geometric discrepancy: 0.1638
The information below is about J3_5J7L_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6WDF|1|3|C|936
6WDF|1|3|A|937
6WDF|1|3|A|938
6WDF|1|3|G|939
*
6WDF|1|3|C|1344
6WDF|1|3|U|1345
6WDF|1|3|A|1346
6WDF|1|3|G|1347
6WDF|1|3|U|1348
6WDF|1|3|A|1349
6WDF|1|3|A|1350
*
6WDF|1|3|U|1372
6WDF|1|3|G|1373
6WDF|1|3|A|1374
6WDF|1|3|A|1375
6WDF|1|3|U|1376
6WDF|1|3|A|1377
6WDF|1|3|C|1378
6WDF|1|3|G|1379

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S7
Chain N
30S ribosomal protein S9

Coloring options:


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