J3_6WDH_036

3D structure

PDB id

6WDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6WDH|1|1|U|321, 6WDH|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDH_036 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1803

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WDH|1|1|G|297
6WDH|1|1|G|298
6WDH|1|1|A|299
6WDH|1|1|A|300
6WDH|1|1|G|301
*
6WDH|1|1|C|316
6WDH|1|1|G|317
6WDH|1|1|C|318
6WDH|1|1|G|319
6WDH|1|1|A|320
6WDH|1|1|U|321
6WDH|1|1|A|322
6WDH|1|1|C|323
6WDH|1|1|A|324
6WDH|1|1|G|325
*
6WDH|1|1|C|337
6WDH|1|1|G|338
6WDH|1|1|U|339
6WDH|1|1|A|340
6WDH|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24