J3_6WDJ_003

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6WDJ|1|1|U|686, 6WDJ|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDJ_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3398

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDJ|1|1|U|683
6WDJ|1|1|G|684
6WDJ|1|1|A|685
6WDJ|1|1|U|686
6WDJ|1|1|C|687
6WDJ|1|1|U|688
6WDJ|1|1|A|689
*
6WDJ|1|1|U|773
6WDJ|1|1|G|774
6WDJ|1|1|G|775
*
6WDJ|1|1|C|791
6WDJ|1|1|A|792
6WDJ|1|1|A|793
6WDJ|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2