3D structure

PDB id
6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
6WDJ|1|3|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WDJ_017 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1373
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6WDJ|1|3|U|672
6WDJ|1|3|A|673
*
6WDJ|1|3|U|717
6WDJ|1|3|A|718
6WDJ|1|3|C|719
6WDJ|1|3|C|720
6WDJ|1|3|G|721
6WDJ|1|3|G|722
6WDJ|1|3|U|723
6WDJ|1|3|G|724
6WDJ|1|3|G|725
*
6WDJ|1|3|C|732
6WDJ|1|3|G|733
6WDJ|1|3|G|734

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S6
Chain P
30S ribosomal protein S11
Chain T
30S ribosomal protein S15
Chain W
30S ribosomal protein S18
Chain Z
30S ribosomal protein S21
Chain b
50S ribosomal protein L2

Coloring options:


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