J3_6WDJ_021
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6WDJ|1|3|A|958, 6WDJ|1|3|A|975, 6WDJ|1|3|G|976, 6WDJ|1|3|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WDJ_021 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0952
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6WDJ|1|3|U|955
6WDJ|1|3|U|956
6WDJ|1|3|U|957
6WDJ|1|3|A|958
6WDJ|1|3|A|959
6WDJ|1|3|U|960
6WDJ|1|3|U|961
6WDJ|1|3|C|962
*
6WDJ|1|3|G|973
6WDJ|1|3|A|974
6WDJ|1|3|A|975
6WDJ|1|3|G|976
6WDJ|1|3|A|977
6WDJ|1|3|A|978
6WDJ|1|3|C|979
6WDJ|1|3|C|980
6WDJ|1|3|U|981
6WDJ|1|3|U|982
6WDJ|1|3|A|983
6WDJ|1|3|C|984
*
6WDJ|1|3|G|1221
6WDJ|1|3|G|1222
6WDJ|1|3|C|1223
6WDJ|1|3|U|1224
6WDJ|1|3|A|1225
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain O
- 30S ribosomal protein S10
- Chain R
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
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