J3_6WDR_001

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDR_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.175

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6WDR|1|2|A|41
6WDR|1|2|G|42
*
6WDR|1|2|C|696
6WDR|1|2|G|697
6WDR|1|2|C|698
6WDR|1|2|A|699
6WDR|1|2|A|700
6WDR|1|2|A|701
6WDR|1|2|U|702
*
6WDR|1|2|A|727
6WDR|1|2|G|728
6WDR|1|2|U|729

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1