J3_6WLT_012

3D structure

PDB id

6WLT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAGAG*CG*CAAAAGGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WLT_012 not in the Motif Atlas

Geometric match to J3_3OXE_001

Geometric discrepancy: 0.0338

The information below is about J3_3OXE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58957.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6WLT|12|A|G|145
6WLT|12|A|G|146
6WLT|12|A|A|147
6WLT|12|A|G|148
6WLT|12|A|A|149
6WLT|12|A|G|150
*
6WLT|12|A|C|166
6WLT|12|A|G|167
*
6WLT|12|A|C|212
6WLT|12|A|A|213
6WLT|12|A|A|214
6WLT|12|A|A|215
6WLT|12|A|A|216
6WLT|12|A|G|217
6WLT|12|A|G|218
6WLT|12|A|A|219
6WLT|12|A|C|220

Current chains

Chain A

RNA (231-MER)

Nearby chains