J3_6WLU_008

3D structure

PDB id

6WLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAGAG*CG*CAAAAGGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WLU_008 not in the Motif Atlas

Geometric match to J3_3OXE_001

Geometric discrepancy: 0.0337

The information below is about J3_3OXE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58957.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6WLU|8|A|G|145
6WLU|8|A|G|146
6WLU|8|A|A|147
6WLU|8|A|G|148
6WLU|8|A|A|149
6WLU|8|A|G|150
*
6WLU|8|A|C|166
6WLU|8|A|G|167
*
6WLU|8|A|C|212
6WLU|8|A|A|213
6WLU|8|A|A|214
6WLU|8|A|A|215
6WLU|8|A|A|216
6WLU|8|A|G|217
6WLU|8|A|G|218
6WLU|8|A|A|219
6WLU|8|A|C|220

Current chains

Chain A

RNA (231-MER)

Nearby chains