J3_6WNT_005
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAC*GCCGUAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- 6WNT|1|4|A|1050, 6WNT|1|4|U|1080
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNT_005 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.2563
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6WNT|1|4|G|1048
6WNT|1|4|G|1049
6WNT|1|4|A|1050
6WNT|1|4|A|1051
6WNT|1|4|C|1052
*
6WNT|1|4|G|1076
6WNT|1|4|C|1077
6WNT|1|4|C|1078
6WNT|1|4|G|1079
6WNT|1|4|U|1080
6WNT|1|4|A|1081
6WNT|1|4|G|1082
*
6WNT|1|4|C|1134
6WNT|1|4|G|1135
6WNT|1|4|C|1136
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L25
- Chain w
- 50S ribosomal protein L27
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