J3_6WNT_011

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6WNT|1|4|U|2462, 6WNT|1|4|A|2464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNT|1|4|C|2423
6WNT|1|4|U|2424
6WNT|1|4|A|2425
6WNT|1|4|A|2426
6WNT|1|4|U|2427
*
6WNT|1|4|A|2445
6WNT|1|4|G|2446
6WNT|1|4|G|2447
6WNT|1|4|U|2448
6WNT|1|4|U|2449
6WNT|1|4|A|2450
6WNT|1|4|G|2451
*
6WNT|1|4|C|2460
6WNT|1|4|A|2461
6WNT|1|4|U|2462
6WNT|1|4|A|2463
6WNT|1|4|A|2464
6WNT|1|4|G|2465

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18

Chain w

50S ribosomal protein L27