J3_6WNT_012

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6WNT|1|4|A|2646, 6WNT|1|4|U|2647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNT_012 not in the Motif Atlas

Geometric match to J3_5J7L_046

Geometric discrepancy: 0.1245

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6WNT|1|4|C|2645
6WNT|1|4|A|2646
6WNT|1|4|U|2647
6WNT|1|4|C|2648
*
6WNT|1|4|G|2673
6WNT|1|4|U|2674
6WNT|1|4|A|2675
*
6WNT|1|4|U|2689
6WNT|1|4|U|2690
6WNT|1|4|U|2691
6WNT|1|4|A|2692
6WNT|1|4|A|2693
6WNT|1|4|A|2694
6WNT|1|4|G|2695

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14