J3_6WNT_017

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6WNT|1|4|U|321, 6WNT|1|4|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNT_017 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1481

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WNT|1|4|G|297
6WNT|1|4|G|298
6WNT|1|4|A|299
6WNT|1|4|A|300
6WNT|1|4|G|301
*
6WNT|1|4|C|316
6WNT|1|4|G|317
6WNT|1|4|C|318
6WNT|1|4|G|319
6WNT|1|4|A|320
6WNT|1|4|U|321
6WNT|1|4|A|322
6WNT|1|4|C|323
6WNT|1|4|A|324
6WNT|1|4|G|325
*
6WNT|1|4|C|337
6WNT|1|4|G|338
6WNT|1|4|U|339
6WNT|1|4|A|340
6WNT|1|4|C|341

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24