J3_6WNV_013

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNV_013 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0853

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|G|30
6WNV|1|4|C|31
*
6WNV|1|4|G|474
6WNV|1|4|C|475
6WNV|1|4|G|476
6WNV|1|4|A|477
6WNV|1|4|A|478
6WNV|1|4|A|479
6WNV|1|4|A|480
6WNV|1|4|G|481
*
6WNV|1|4|C|509
6WNV|1|4|C|510

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain u

50S ribosomal protein L24