3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
6WNV|1|4|U|2961, 6WNV|1|4|A|2963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WNV_026 not in the Motif Atlas
Geometric match to J3_5J7L_048
Geometric discrepancy: 0.1489
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6WNV|1|4|G|2940
6WNV|1|4|A|2941
6WNV|1|4|A|2942
6WNV|1|4|C|2943
*
6WNV|1|4|G|2959
6WNV|1|4|U|2960
6WNV|1|4|U|2961
6WNV|1|4|G|2962
6WNV|1|4|A|2963
6WNV|1|4|U|2964
*
6WNV|1|4|A|3010
6WNV|1|4|A|3011
6WNV|1|4|U|3012
6WNV|1|4|G|3013
6WNV|1|4|A|3014
6WNV|1|4|A|3015
6WNV|1|4|C|3016

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


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