J3_6WNW_014

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_014 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0951

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|G|30
6WNW|1|4|C|31
*
6WNW|1|4|G|474
6WNW|1|4|C|475
6WNW|1|4|G|476
6WNW|1|4|A|477
6WNW|1|4|A|478
6WNW|1|4|A|479
6WNW|1|4|A|480
6WNW|1|4|G|481
*
6WNW|1|4|C|509
6WNW|1|4|C|510

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain u

50S ribosomal protein L24