J3_6WNW_017

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_017 not in the Motif Atlas

Geometric match to J3_8VTW_002

Geometric discrepancy: 0.0772

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6WNW|1|4|C|698
6WNW|1|4|A|699
6WNW|1|4|G|700
*
6WNW|1|4|C|732
6WNW|1|4|G|733
6WNW|1|4|A|734
6WNW|1|4|A|735
6WNW|1|4|C|736
*
6WNW|1|4|G|760
6WNW|1|4|A|761
6WNW|1|4|U|762
6WNW|1|4|G|763

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2