J3_6WNW_019

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_019 not in the Motif Atlas

Geometric match to J3_5J7L_040

Geometric discrepancy: 0.2384

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|G|1183
6WNW|1|4|G|1184
6WNW|1|4|A|1185
*
6WNW|1|4|U|1209
6WNW|1|4|U|1210
6WNW|1|4|U|1211
6WNW|1|4|A|1212
6WNW|1|4|A|1213
6WNW|1|4|A|1214
6WNW|1|4|G|1215
*
6WNW|1|4|C|1230
6WNW|1|4|A|1231
6WNW|1|4|C|1232

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain h

50S ribosomal protein L10

Chain i

50S ribosomal protein L11