J3_6WNW_023

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_023 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.0816

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6WNW|1|4|C|2219
6WNW|1|4|U|2220
6WNW|1|4|G|2221
*
6WNW|1|4|C|2324
6WNW|1|4|U|2325
6WNW|1|4|A|2326
6WNW|1|4|A|2327
6WNW|1|4|C|2328
*
6WNW|1|4|G|2351
6WNW|1|4|G|2352
6WNW|1|4|A|2353
6WNW|1|4|C|2354
6WNW|1|4|A|2355
6WNW|1|4|G|2356

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28