J3_6WOO_003

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

6WOO|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_003 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.0799

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6WOO|1|2|A|881
6WOO|1|2|U|882
6WOO|1|2|C|883
6WOO|1|2|A|884
*
6WOO|1|2|U|928
6WOO|1|2|A|929
6WOO|1|2|A|930
6WOO|1|2|C|931
6WOO|1|2|U|932
6WOO|1|2|A|933
6WOO|1|2|C|934
6WOO|1|2|U|935
6WOO|1|2|G|936
*
6WOO|1|2|C|943
6WOO|1|2|A|944
6WOO|1|2|U|945
6WOO|1|2|U|946
6WOO|1|2|U|947

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain OO

uS11

Chain aa

eS26

Chain p

eL43