J3_6WOO_004

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUA*UACG*CAAAG

Length

12 nucleotides

Bulged bases

6WOO|1|2|C|1082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|C|1037
6WOO|1|2|U|1038
6WOO|1|2|A|1039
*
6WOO|1|2|U|1080
6WOO|1|2|A|1081
6WOO|1|2|C|1082
6WOO|1|2|G|1083
*
6WOO|1|2|C|1090
6WOO|1|2|A|1091
6WOO|1|2|A|1092
6WOO|1|2|A|1093
6WOO|1|2|G|1094

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

uS2

Chain NN

uS15

Chain VV

eS21

Chain WW

uS8

Chain XX

uS12

Chain aa

eS26

Chain bb

eS27