J3_6WOO_025
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*CUGAU
- Length
- 26 nucleotides
- Bulged bases
- 6WOO|1|5|G|2549, 6WOO|1|5|U|2550, 6WOO|1|5|U|2551, 6WOO|1|5|A|2554, 6WOO|1|5|U|2558, 6WOO|1|5|U|2559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|A|2529
6WOO|1|5|G|2530
6WOO|1|5|C|2531
6WOO|1|5|U|2532
*
6WOO|1|5|A|2547
6WOO|1|5|C|2548
6WOO|1|5|G|2549
6WOO|1|5|U|2550
6WOO|1|5|U|2551
6WOO|1|5|C|2552
6WOO|1|5|U|2553
6WOO|1|5|A|2554
6WOO|1|5|G|2555
6WOO|1|5|C|2556
6WOO|1|5|A|2557
6WOO|1|5|U|2558
6WOO|1|5|U|2559
6WOO|1|5|C|2560
6WOO|1|5|A|2561
6WOO|1|5|A|2562
6WOO|1|5|G|2563
*
6WOO|1|5|C|2577
6WOO|1|5|U|2578
6WOO|1|5|G|2579
6WOO|1|5|A|2580
6WOO|1|5|U|2581
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- eL27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
Coloring options: