J3_6WOO_028
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_028 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.1812
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6WOO|1|5|C|3298
6WOO|1|5|A|3299
6WOO|1|5|U|3300
*
6WOO|1|5|A|3314
6WOO|1|5|G|3315
6WOO|1|5|A|3316
6WOO|1|5|U|3317
6WOO|1|5|G|3318
*
6WOO|1|5|C|3388
6WOO|1|5|U|3389
6WOO|1|5|G|3390
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain P
- uL22
- Chain d
- eL31
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