J3_6WOO_031
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 6WOO|1|2|U|226, 6WOO|1|2|U|239, 6WOO|1|2|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|2|A|212
6WOO|1|2|G|213
6WOO|1|2|A|214
6WOO|1|2|U|215
6WOO|1|2|A|216
6WOO|1|2|A|217
6WOO|1|2|A|218
6WOO|1|2|A|219
6WOO|1|2|A|220
6WOO|1|2|A|221
6WOO|1|2|U|222
6WOO|1|2|C|223
6WOO|1|2|A|224
6WOO|1|2|A|225
6WOO|1|2|U|226
6WOO|1|2|G|227
*
6WOO|1|2|C|236
6WOO|1|2|U|237
6WOO|1|2|C|238
6WOO|1|2|U|239
6WOO|1|2|U|240
6WOO|1|2|U|241
6WOO|1|2|G|242
*
6WOO|1|2|C|249
6WOO|1|2|A|250
6WOO|1|2|U|251
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4
- Chain GG
- eS6
- Chain II
- eS8
- Chain LL
- uS17
Coloring options: