3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGAUAAAAAAUCAAUG*CUCUUUG*CAU
Length
26 nucleotides
Bulged bases
6WOO|1|2|U|226, 6WOO|1|2|U|239, 6WOO|1|2|U|240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WOO|1|2|A|212
6WOO|1|2|G|213
6WOO|1|2|A|214
6WOO|1|2|U|215
6WOO|1|2|A|216
6WOO|1|2|A|217
6WOO|1|2|A|218
6WOO|1|2|A|219
6WOO|1|2|A|220
6WOO|1|2|A|221
6WOO|1|2|U|222
6WOO|1|2|C|223
6WOO|1|2|A|224
6WOO|1|2|A|225
6WOO|1|2|U|226
6WOO|1|2|G|227
*
6WOO|1|2|C|236
6WOO|1|2|U|237
6WOO|1|2|C|238
6WOO|1|2|U|239
6WOO|1|2|U|240
6WOO|1|2|U|241
6WOO|1|2|G|242
*
6WOO|1|2|C|249
6WOO|1|2|A|250
6WOO|1|2|U|251

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain GG
eS6
Chain II
eS8
Chain LL
uS17

Coloring options:

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