3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGGUG*UGUC*GAUAACGA
Length
17 nucleotides
Bulged bases
6WOO|1|2|A|1321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WOO|1|2|U|1290
6WOO|1|2|G|1291
6WOO|1|2|G|1292
6WOO|1|2|U|1293
6WOO|1|2|G|1294
*
6WOO|1|2|U|1303
6WOO|1|2|G|1304
6WOO|1|2|U|1305
6WOO|1|2|C|1306
*
6WOO|1|2|G|1318
6WOO|1|2|A|1319
6WOO|1|2|U|1320
6WOO|1|2|A|1321
6WOO|1|2|A|1322
6WOO|1|2|C|1323
6WOO|1|2|G|1324
6WOO|1|2|A|1325

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AA
uS2
Chain CC
uS5
Chain DD
uS3
Chain RR
eS17

Coloring options:

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