J3_6WOO_035
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 6WOO|1|5|U|117, 6WOO|1|5|G|120, 6WOO|1|5|A|121, 6WOO|1|5|U|147, 6WOO|1|5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|C|113
6WOO|1|5|A|114
6WOO|1|5|A|115
6WOO|1|5|A|116
6WOO|1|5|U|117
6WOO|1|5|U|118
6WOO|1|5|U|119
6WOO|1|5|G|120
6WOO|1|5|A|121
6WOO|1|5|A|122
6WOO|1|5|A|123
6WOO|1|5|U|124
*
6WOO|1|5|A|144
6WOO|1|5|G|145
6WOO|1|5|U|146
6WOO|1|5|U|147
6WOO|1|5|G|148
6WOO|1|5|U|149
6WOO|1|5|A|150
6WOO|1|5|A|151
6WOO|1|5|U|152
6WOO|1|5|U|153
6WOO|1|5|U|154
6WOO|1|5|G|155
6WOO|1|5|G|156
6WOO|1|5|A|157
6WOO|1|5|G|158
*
6WOO|1|5|C|263
6WOO|1|5|G|264
6WOO|1|5|A|265
6WOO|1|5|A|266
6WOO|1|5|G|267
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- eL8
- Chain L
- eL13
- Chain N
- eL15
- Chain h
- uL29
- Chain i
- eL36
Coloring options: