J3_6WOO_039
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 6WOO|1|5|C|1556, 6WOO|1|5|A|1558, 6WOO|1|5|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|A|1537
6WOO|1|5|G|1538
6WOO|1|5|A|1539
6WOO|1|5|U|1540
6WOO|1|5|G|1541
6WOO|1|5|G|1542
*
6WOO|1|5|C|1551
6WOO|1|5|G|1552
6WOO|1|5|U|1553
6WOO|1|5|U|1554
6WOO|1|5|U|1555
6WOO|1|5|C|1556
6WOO|1|5|A|1557
6WOO|1|5|A|1558
6WOO|1|5|A|1559
6WOO|1|5|G|1560
*
6WOO|1|5|C|1579
6WOO|1|5|A|1580
6WOO|1|5|C|1581
6WOO|1|5|C|1582
6WOO|1|5|A|1583
6WOO|1|5|U|1584
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- eL15
- Chain X
- uL23
- Chain j
- eL37
Coloring options: