J3_6WOO_043
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6WOO|1|5|A|3172, 6WOO|1|5|G|3173, 6WOO|1|5|A|3215, 6WOO|1|5|C|3217, 6WOO|1|5|A|3218, 6WOO|1|5|A|3268, 6WOO|1|5|U|3270, 6WOO|1|5|C|3272, 6WOO|1|5|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_043 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1837
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6WOO|1|5|U|3171
6WOO|1|5|A|3172
6WOO|1|5|G|3173
6WOO|1|5|A|3174
6WOO|1|5|U|3175
6WOO|1|5|G|3176
*
6WOO|1|5|C|3212
6WOO|1|5|A|3213
6WOO|1|5|U|3214
6WOO|1|5|A|3215
6WOO|1|5|G|3216
6WOO|1|5|C|3217
6WOO|1|5|A|3218
6WOO|1|5|G|3219
6WOO|1|5|G|3220
*
6WOO|1|5|C|3265
6WOO|1|5|G|3266
6WOO|1|5|A|3267
6WOO|1|5|A|3268
6WOO|1|5|U|3269
6WOO|1|5|U|3270
6WOO|1|5|G|3271
6WOO|1|5|C|3272
6WOO|1|5|A|3273
6WOO|1|5|A|3274
6WOO|1|5|U|3275
6WOO|1|5|G|3276
6WOO|1|5|U|3277
6WOO|1|5|C|3278
6WOO|1|5|A|3279
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain E
- eL6
- Chain M
- eL14
- Chain O
- uL13
- Chain P
- uL22
- Chain f
- eL33
Coloring options: